BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002A06SP1|AL424886
(508 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 677 0.0
>3x_Contig1781
Length = 20717
Score = 677 bits (324), Expect = 0.0
Identities = 439/504 (87%)
Strand = Plus / Minus
Query: 1 tgccaacwagacacctcttgatgaccaagagatcttgttacccaatggtttgttagattc 60
||||||| ||||||||||||| |||||||||| ||||| ||||||||| |||| ||| ||
Sbjct: 12245 tgccaacaagacacctcttgaagaccaagagaacttgtaacccaatggattgtcagaatc 12186
Query: 61 ttctggtgctggtagaccaccacagttcgayacatackacttgttctttccaccwacctt 120
|||||| ||||||||||||||||||| ||| ||| || ||||| |||| ||||| |||||
Sbjct: 12185 ttctggagctggtagaccaccacagtacgacacaaacgacttgatcttaccaccaacctt 12126
Query: 121 gtkcwcttcgtcwattgtcttkacagcktacwattkgtcgataccagggtccawtccwat 180
|| | ||||||| || ||||| ||||| ||| | | ||||||||||||||||| || ||
Sbjct: 12125 gtgcacttcgtcaatggtcttgacagcgtacaaatggtcgataccagggtccaaaccaat 12066
Query: 181 ttygttcatkacggtkataccagcttccttkatagctggttccwwttctcttwwkgcatc 240
|| |||||| ||||| |||||||||||||| ||||| |||||| ||||||| |||||
Sbjct: 12065 ttcgttcatgacggtgataccagcttccttgatagcaggttccaattctcttaaggcatc 12006
Query: 241 ggwtatktwtgatgaggtaacwtcgttcttcttcawtctgatagctgattgaaccacagc 300
|| || | ||| |||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 12005 ggaaatgtatgaagaggtaacaacgttcttcttcaatctgatagcagattgaaccacagc 11946
Query: 301 tggatggttagtktatggkatctwtgakatctccaaatcgtggtcagccaatgctgcgtc 360
|||||||| ||| ||||| ||| ||| ||| |||||||||||||||||||||| |||||
Sbjct: 11945 tggatggtaagtgtatgggatcaatgagatcaccaaatcgtggtcagccaatgcagcgtc 11886
Query: 361 caattgttttggatcggwaacgwamaawgagatggcattagawccagawgctttggccaa 420
||||||||||||||||| |||| || |||||||||||||| ||||| |||||||||||
Sbjct: 11885 caattgttttggatcggaaacgtccaatgagatggcattagaaccagaagctttggccaa 11826
Query: 421 agcttgakctttgttcaaagttctacwagckacggtgactgatataccatcagtagcgga 480
||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 11825 agcttgagctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcgga 11766
Query: 481 caaaacgtcgacaacaggttgagc 504
||||||||||||||||||||||||
Sbjct: 11765 caaaacgtcgacaacaggttgagc 11742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.45 0.722 1.37
Gapped
Lambda K H
1.45 0.722 1.37
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1775
Number of Sequences: 1807
Number of extensions: 1775
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 508
length of database: 10,358,551
effective HSP length: 16
effective length of query: 492
effective length of database: 10,329,639
effective search space: 5082182388
effective search space used: 5082182388
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.3 bits)
S1: 11 (23.5 bits)
S2: 47 (98.8 bits)